Laser Technique Enables 3D Structural Analysis of Small Objects

A new technology invented to automate the laborious process of preparing plant roots for phenotyping has morphed into a powerful tool for exploring the three-dimensional structure of small objects. Now, two former Penn State students have formed a start-up company targeting agribusiness and horticultural research.

The standard method of preparing root samples for analysis requires cutting thin slices of root by hand, a process that yields four to five slices per hour. Using a nanosecond-pulse laser, Hall developed a method to slice 11 identically spaced root samples per second.

“Then I had to take the samples all the way across campus to the root lab to have them analyzed,” Hall says. “It was easier to buy a good camera lens and take the photos myself and send the files to the lab.”

Hall struggled with finding the proper backlighting to make clear images but eventually discovered that the laser itself provided sufficient light to light up the image while it was being cut. By placing the root on a moveable platform beneath the laser, he could incrementally vaporize sections of the root, leaving a series of clear surface images, which could be combined with software to make a 3D rendering of the interior and exterior of the sample.

The laser tomography method is novel in that it provides high contrast, full color images without the use of contrast enhancing agents. This allows researchers to see nuance compositional differences in their samples they would not be able to see otherwise. Additional benefits of the laser tomography method are its speed, on the order of minutes, and that in most cases no preparation is required for the small biological specimens studied.

Penn State has applied for a patent, and Hall and his business partner Brian Reinhardt, a former Penn State graduate student, have founded a company, Lasers for Innovative Solutions (L4IS), aimed at providing large agriculture companies with high throughput phenotyping of their new products, something they don’t currently have. Reinhardt has a physics and computer science background and an interest in computer gaming. (His fast computer and high-end video card became early assets of L4IS.)

At a recent talk at Penn State’s Millennium Science Complex, Hall wowed the audience with images of the complex internal structures of plants and insects. But beyond the wow factor, it was the possibility of gathering scientific data in a colorful, clear, and detailed three-dimensional representation that had the audience talking. There were suggestions for new scientific uses for his technology, which Hall welcomed. “We don’t even know what all we can do with this yet.

“Technology is moving so fast. There are techniques we can combine with ours to get chemical information out of the samples. We have to start approaching some of these scientific problems differently. We can do 3D analysis. Now what else can we do?” -- Penn State